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| 155 | <li>Optional SAGA GIS support</li> |
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| 165 | |
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| 166 | <div class="section" id="optional-saga-gis-support"> |
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| 167 | <span id="kernel-sagagis"></span><h1>Optional SAGA GIS support<a class="headerlink" href="#optional-saga-gis-support" title="Permalink to this headline">¶</a></h1> |
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| 168 | <p><a class="reference external" href="http://orfeo-toolbox.org/otb/">SAGA GIS</a> provides a comprehensive set of geoscientific methods and spatial algorithms. The optional SAGA GIS support is available since <a class="reference external" href="http://zoo-project.org">ZOO-Project 1.5</a>. It allows to execute the <a class="reference external" href="http://www.saga-gis.org/saga_module_doc/2.1.4/index.html">SAGA Modules</a> directly as ZOO WPS Services thanks to a <a class="reference internal" href="index.html#kernel-index"><span>ZOO-Kernel</span></a> specific internal mechanism which is detailed in this section.</p> |
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| 169 | <div class="admonition note"> |
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| 170 | <p class="first admonition-title">Note</p> |
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| 171 | <p class="last"><a class="reference internal" href="../_images/sagagis.png"><img alt="SAGA GIS logo" src="../_images/sagagis.png" style="width: 45.0px; height: 45.0px;" /></a> <a class="reference external" href="https://www.orfeo-toolbox.org">SAGA GIS</a> is the System for Automated Geoscientific Analyses. Learn more on official <a class="reference external" href="http://www.saga-gis.org/en/index.html">website</a>.</p> |
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| 172 | </div> |
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| 173 | <div class="section" id="how-does-it-work"> |
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| 174 | <h2>How does it work ?<a class="headerlink" href="#how-does-it-work" title="Permalink to this headline">¶</a></h2> |
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| 175 | </div> |
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| 176 | <div class="section" id="installation-and-configuration"> |
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| 177 | <h2>Installation and configuration<a class="headerlink" href="#installation-and-configuration" title="Permalink to this headline">¶</a></h2> |
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| 178 | <p>Follow the step described bellow in order to activate the ZOO-Project optional SAGA GIS support.</p> |
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| 179 | <div class="section" id="prerequisites"> |
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| 180 | <h3>Prerequisites<a class="headerlink" href="#prerequisites" title="Permalink to this headline">¶</a></h3> |
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| 181 | <blockquote> |
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| 182 | <div><ul class="simple"> |
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| 183 | <li>latest <a class="reference external" href="http://zoo-project.org/trac/browser/trunk/zoo-project/zoo-kernel">ZOO-Kernel</a> trunk version</li> |
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| 184 | <li>SAGA GIS (<a class="reference external" href="http://saga-gis.org">SAGA-GIS 2.1.4</a> )</li> |
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| 185 | <li>libLAS-1.2 (<a class="reference external" href="https://github.com/libLAS/libLAS-1.2">LibLAS-1.2</a> )</li> |
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| 186 | </ul> |
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| 187 | </div></blockquote> |
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| 188 | </div> |
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| 189 | <div class="section" id="installation-steps"> |
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| 190 | <h3>Installation steps<a class="headerlink" href="#installation-steps" title="Permalink to this headline">¶</a></h3> |
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| 191 | <div class="admonition note"> |
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| 192 | <p class="first admonition-title">Note</p> |
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| 193 | <p class="last">These installation steps were successfully tested on Ubuntu 14.4 LTS</p> |
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| 194 | </div> |
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| 195 | <p>Download lastest ZOO-Kernel code from SVN.</p> |
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| 196 | <div class="highlight-guess"><div class="highlight"><pre>svn checkout http://svn.zoo-project.org/svn/trunk/zoo-kernel zoo-kernel |
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| 197 | </pre></div> |
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| 198 | </div> |
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| 199 | <p>Then compile ZOO-Kernel using the needed configuration options as shown bellow:</p> |
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| 200 | <div class="highlight-guess"><div class="highlight"><pre>cd zoo-kernel |
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| 201 | autoconf |
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| 202 | ./configure --with-saga=/usr/local/ |
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| 203 | make |
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| 204 | </pre></div> |
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| 205 | </div> |
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| 206 | <p>And copy the newly created zoo_loader.cgi to <code class="docutils literal"><span class="pre">/usr/lib/cgi-bin</span></code> :</p> |
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| 207 | <div class="highlight-guess"><div class="highlight"><pre>cp zoo_loader.cgi /usr/lib/cgi-bin |
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| 208 | </pre></div> |
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| 209 | </div> |
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| 210 | <div class="section" id="configuration-steps"> |
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| 211 | <h4>Configuration steps<a class="headerlink" href="#configuration-steps" title="Permalink to this headline">¶</a></h4> |
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| 212 | <div class="section" id="main-configuration-file"> |
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| 213 | <h5>Main configuration file<a class="headerlink" href="#main-configuration-file" title="Permalink to this headline">¶</a></h5> |
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| 214 | <p>Add the following content to your <code class="docutils literal"><span class="pre">/usr/lib/cgi-bin/main.cfg</span></code> file |
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| 215 | in the <code class="docutils literal"><span class="pre">[env]</span></code> section:</p> |
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| 216 | <div class="highlight-guess"><div class="highlight"><pre>ITK_AUTOLOAD_PATH=/usr/local/lib/otb/applications |
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| 217 | </pre></div> |
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| 218 | </div> |
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| 219 | </div> |
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| 220 | <div class="section" id="services-configuration-file"> |
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| 221 | <h5>Services configuration file<a class="headerlink" href="#services-configuration-file" title="Permalink to this headline">¶</a></h5> |
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| 222 | <p>The build of the <a class="reference external" href="http://zoo-project.org/trac/browser/trunk/thirds/otb2zcfg">otb2zcfg</a> utility is required to activate the available OTB Applications as WPS services. This can be done using the following command:</p> |
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| 223 | <div class="highlight-guess"><div class="highlight"><pre>mkdir build |
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| 224 | cd build |
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| 225 | ccmake .. |
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| 226 | make |
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| 227 | </pre></div> |
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| 228 | </div> |
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| 229 | <p>Run the following command to generate all the needed zcfg files for the available OTB Application:</p> |
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| 230 | <div class="highlight-guess"><div class="highlight"><pre>mkdir zcfgs |
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| 231 | cd zcfgs |
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| 232 | export ITK_AUTOLOAD_PATH=/your/path/to/otb/applications |
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| 233 | ../build/otb2zcfg |
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| 234 | mkdir /location/to/your/cgi-bin/OTB |
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| 235 | cp *zcfg /location/to/your/cgi-bin/OTB |
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| 236 | </pre></div> |
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| 237 | </div> |
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| 238 | </div> |
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| 239 | <div class="section" id="test-the-zoo-saga-support"> |
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| 240 | <h5>Test the ZOO SAGA support<a class="headerlink" href="#test-the-zoo-saga-support" title="Permalink to this headline">¶</a></h5> |
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| 241 | <p>Once done, OTB Applications should be listed as available WPS Services when runing a GetCapabilities request</p> |
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| 242 | <div class="highlight-guess"><div class="highlight"><pre>http://localhost/cgi-bin/zoo_loader.cgi?request=GetCapabilities&service=WPS |
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| 243 | </pre></div> |
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| 244 | </div> |
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| 245 | <p>Each OTB Service can then be described individually using the DescribeProcess request, as for example:</p> |
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| 246 | <div class="highlight-guess"><div class="highlight"><pre>http://localhost/cgi-bin/zoo_loader.cgi?request=DescribeProcess&service=WPS&version=1.0.0&Identifier=OTB.BandMath |
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| 247 | </pre></div> |
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| 248 | </div> |
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| 249 | <p>And executed according to your needs, as for the following example executing OTB.BandMath with the OTB sample data as input</p> |
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| 250 | <div class="highlight-guess"><div class="highlight"><pre><span class="nt">http</span><span class="o">://</span><span class="nt">localhost</span><span class="o">/</span><span class="nt">cgi-bin</span><span class="o">/</span><span class="nt">zoo_loader</span><span class="nc">.cgi</span><span class="o">?</span><span class="nt">request</span><span class="o">=</span><span class="nt">Execute</span><span class="o">&</span><span class="nt">service</span><span class="o">=</span><span class="nt">WPS</span><span class="o">&</span><span class="nt">version</span><span class="o">=</span><span class="nt">1</span><span class="nc">.0.0</span><span class="o">&</span><span class="nt">Identifier</span><span class="o">=</span><span class="nt">OTB</span><span class="nc">.BandMath</span><span class="o">&</span><span class="nt">DataInputs</span><span class="o">=</span><span class="nt">il</span><span class="o">=</span><span class="nt">Reference</span><span class="k">@xlink</span><span class="nd">:href</span><span class="o">=</span><span class="nt">http</span><span class="o">://</span><span class="nt">hg</span><span class="nc">.orfeo-toolbox.org</span><span class="o">/</span><span class="nt">OTB-Data</span><span class="o">/</span><span class="nt">raw-file</span><span class="o">/</span><span class="nt">ca154074b282</span><span class="o">/</span><span class="nt">Examples</span><span class="o">/</span><span class="nt">verySmallFSATSW</span><span class="nc">.tif</span><span class="p">;</span><span class="nt">il</span><span class="o">=</span><span class="nt">Reference</span><span class="k">@xlink</span><span class="nd">:href</span><span class="o">=</span><span class="nt">http</span><span class="o">://</span><span class="nt">hg</span><span class="nc">.orfeo-toolbox.org</span><span class="o">/</span><span class="nt">OTB-Data</span><span class="o">/</span><span class="nt">raw-file</span><span class="o">/</span><span class="nt">ca154074b282</span><span class="o">/</span><span class="nt">Examples</span><span class="o">/</span><span class="nt">verySmallFSATSW_nir</span><span class="nc">.tif</span><span class="p">;</span><span class="nt">out</span><span class="o">=</span><span class="nt">float</span><span class="o">;</span><span class="nt">exp</span><span class="o">=</span><span class="nt">im1b3</span><span class="o">*</span><span class="nt">cos</span><span class="o">%</span><span class="nt">28im1b1</span><span class="o">%</span><span class="nt">29</span><span class="o">,</span><span class="nt">im1b2</span><span class="o">*</span><span class="nt">cos</span><span class="o">%</span><span class="nt">28im1b1</span><span class="o">%</span><span class="nt">29</span><span class="o">,</span><span class="nt">im1b1</span><span class="o">*</span><span class="nt">cos</span><span class="o">%</span><span class="nt">28im1b1</span><span class="o">%</span><span class="nt">29</span><span class="o">&</span><span class="nt">RawDataOutput</span><span class="o">=</span><span class="nt">out</span><span class="k">@mimeType</span><span class="o">=</span><span class="nt">image</span><span class="o">/</span><span class="nt">png</span> |
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| 251 | </pre></div> |
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| 252 | </div> |
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| 253 | <p>When executing OTB applications as WPS Services, it is also possible to check the OTB process status, using the usual ZOO GetStatus request.</p> |
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| 254 | </div> |
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| 298 | URL_ROOT:'../', |
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| 299 | VERSION:'1.4a0', |
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| 300 | COLLAPSE_INDEX:false, |
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| 301 | FILE_SUFFIX:'.html', |
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| 302 | HAS_SOURCE: true |
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| 303 | }; |
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| 304 | </script> |
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| 305 | <script type="text/javascript" src="../_static/jquery.js"></script> |
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| 306 | <script type="text/javascript" src="../_static/underscore.js"></script> |
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| 307 | <script type="text/javascript" src="../_static/doctools.js"></script> |
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| 308 | |
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| 309 | |
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| 310 | |
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| 311 | |
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| 312 | |
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| 313 | <script type="text/javascript" src="../_static/js/theme.js"></script> |
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| 314 | |
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| 315 | |
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| 316 | |
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| 317 | |
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| 318 | <script type="text/javascript"> |
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| 319 | jQuery(function () { |
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| 320 | SphinxRtdTheme.StickyNav.enable(); |
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| 321 | }); |
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| 322 | </script> |
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| 323 | |
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| 324 | |
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| 325 | </body> |
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| 326 | </html> |
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