source: branches/prototype-v0/zoo-project/zoo-services/utils/hpc/service.c @ 839

Last change on this file since 839 was 839, checked in by djay, 7 years ago

Update the source code for HPC support. Automatically adding nested outputs for the HPC support (should this be available for every support?). Add capability to store the metadata in the Collection DataBase?. Addition of the zcfg2sql to import any existing ZCFG file into the Collection DB. Add the support to invoke a callback (for history purpose) in case a [callback] section contains at least one parameter defined (url). Add support to convert maps and map to JSON (for callback use only by now). Fix some memory leaks (some are still there).

  • Property svn:keywords set to Id
File size: 7.2 KB
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1/**
2 * Author : Gérald FENOY
3 *
4 * Copyright 2008-2009 GeoLabs SARL. All rights reserved.
5 *
6 * Permission is hereby granted, free of charge, to any person obtaining a copy
7 * of this software and associated documentation files (the "Software"), to deal
8 * in the Software without restriction, including without limitation the rights
9 * to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
10 * copies of the Software, and to permit persons to whom the Software is
11 * furnished to do so, subject to the following conditions:
12 *
13 * The above copyright notice and this permission notice shall be included in
14 * all copies or substantial portions of the Software.
15 *
16 * THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
17 * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
18 * FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
19 * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
20 * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
21 * OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
22 * THE SOFTWARE.
23 */
24
25
26#include "service.h"
27#include "service_internal.h"
28#include "sshapi.h"
29
30#include <sys/socket.h>
31#include <sys/un.h>
32
33#include <libxml/tree.h>
34#include <libxml/parser.h>
35#include <libxml/xpath.h>
36#include <libxml/xpathInternals.h>
37
38#include <libxslt/xslt.h>
39#include <libxslt/xsltInternals.h>
40#include <libxslt/transform.h>
41#include <libxslt/xsltutils.h>
42
43#include <dirent.h>
44extern "C" {
45
46  /**
47   * FinalizeHPC ZOO Service :
48   * This service is used to inform a ZOO-Kernel waiting for the end of the
49   * execution of a HPC service
50   */
51  ZOO_DLL_EXPORT int FinalizeHPC(maps*& conf,maps*& inputs,maps*& outputs){
52    // Retrieve the jobid corresponding to the identifier generated by SLURM
53    // by reading the file generated when running the SBATCH file
54    map* jobid=getMapFromMaps(inputs,"jobid","value");
55    struct sockaddr_un addr;
56    char buf[100]="3";
57    int fd,rc=NULL;
58    int i=0;
59    SSHCON *test=ssh_connect(conf);
60    if(test==NULL){
61      return SERVICE_FAILED;
62    }
63    map* usid=getMapFromMaps(conf,"lenv","usid");
64    map* tmpPath=getMapFromMaps(conf,"main","tmpPath");
65    char *logPath=(char*)malloc((strlen(tmpPath->value)+strlen(jobid->value)+12)*sizeof(char));
66    sprintf(logPath,"%s/exec_out_%s",tmpPath->value,jobid->value);
67    struct stat f_status;
68    int ts=stat(logPath, &f_status);
69    char* fcontent = NULL;
70    if(ts==0) {
71      fcontent=(char*)malloc(sizeof(char)*(f_status.st_size+1));
72      FILE* f=fopen(logPath,"rb");
73      fread(fcontent,f_status.st_size,1,f);
74      int fsize=f_status.st_size;
75      fcontent[fsize]=0;
76      fclose(f);
77    }else{
78      setMapInMaps(conf,"lenv","message",_("No service with this jobid can be found"));
79      return SERVICE_FAILED;
80    }
81    free(logPath);
82    // Run scontrol to see if the service execution ends
83    // Store all the informations returned by scontrol command as a cfg file to
84    // be parsed back by the ZOO-Kernel waiting for the execution of the remote
85    // service
86    maps* tmpMaps=createMaps("henv");
87    char* command=(char*)malloc((126)*sizeof(char));
88    //memset(&command,0,34);
89    sprintf(command,"scontrol show jobid | grep -A24 %s",fcontent);   
90    if(ssh_exec(conf,command,ssh_get_cnt(conf))==0){
91      free(command);
92      setMapInMaps(conf,"lenv","message",_("Failed to run scontrol remotely"));
93      return SERVICE_FAILED;
94    }else{
95      free(command);
96      logPath=(char*)malloc((strlen(tmpPath->value)+strlen(usid->value)+11)*sizeof(char));
97      sprintf(logPath,"%s/exec_out_%s",tmpPath->value,usid->value);
98      int ts=stat(logPath, &f_status);
99      if(ts==0) {
100        fcontent=(char*)malloc(sizeof(char)*(f_status.st_size+1));
101        FILE* f=fopen(logPath,"rb");
102        fread(fcontent,f_status.st_size,1,f);
103        int fsize=f_status.st_size;
104        fcontent[fsize]=0;
105        fclose(f);
106        free(logPath);
107        fprintf(stderr,"%s \n",fcontent);
108        char *token, *saveptr;
109        token = strtok_r (fcontent, " ", &saveptr);
110        while (token != NULL)
111          {
112            //fprintf(stderr,"%s %d\n",token,__LINE__);
113            char *token1, *saveptr1;
114            char *tmpToken=strdup(token);
115            token1 = strtok_r (tmpToken, "=", &saveptr1);
116            int isNext=-1;
117            int hasTwoElements=0;
118            char *name=NULL;
119            while (token1 != NULL)
120              {
121                if(hasTwoElements==0)
122                  name=strdup(token1);
123                if(hasTwoElements<1)
124                  hasTwoElements+=1;
125                else{
126                  char *value=strdup(token1);
127                  if(value[strlen(value)-1]=='\n')
128                    value[strlen(value)-1]=0;
129                  if(strlen(name)>0 && strlen(value)>0){
130                    if(tmpMaps->content==NULL)
131                      tmpMaps->content=createMap(name,value);
132                    else
133                      addToMap(tmpMaps->content,name,value);
134                    free(value);
135                  }
136                  free(name);
137                  hasTwoElements=0;
138                }
139                token1 = strtok_r (NULL, "=", &saveptr1);
140              }
141            free(tmpToken);
142            token = strtok_r (NULL, " ", &saveptr);
143          }
144      }else{
145        setMapInMaps(conf,"lenv","message",_("Unable to access the downloaded execution log file"));
146        return SERVICE_FAILED;
147      }
148    }
149    logPath=(char*)malloc((strlen(tmpPath->value)+strlen(usid->value)+15)*sizeof(char));
150    sprintf(logPath,"%s/exec_status_%s",tmpPath->value,usid->value);
151    dumpMapsToFile(tmpMaps,logPath,0);
152
153    char *sname=(char*)malloc((strlen(tmpPath->value)+strlen(jobid->value)+21));
154    sprintf(sname,"%s/.wait_socket_%s.sock",tmpPath->value,jobid->value);
155    if ( (fd = socket(AF_UNIX, SOCK_STREAM, 0)) == -1) {
156      perror("socket error");
157      setMapInMaps(conf,"lenv","message",_("Socket error"));
158      return SERVICE_FAILED;
159      }
160    }
161    logPath=(char*)malloc((strlen(tmpPath->value)+strlen(usid->value)+15)*sizeof(char));
162    sprintf(logPath,"%s/exec_status_%s",tmpPath->value,usid->value);
163    dumpMapsToFile(tmpMaps,logPath,0);
164    char *sname=(char*)malloc((strlen(tmpPath->value)+strlen(jobid->value)+21));
165    sprintf(sname,"%s/.wait_socket_%s.sock",tmpPath->value,jobid->value);
166    if ( (fd = socket(AF_UNIX, SOCK_STREAM, 0)) == -1) {
167      perror("socket error");
168      setMapInMaps(conf,"lenv","message",_("Socket error"));
169      return SERVICE_FAILED;
170    }
171    memset(&addr, 0, sizeof(addr));
172    addr.sun_family = AF_UNIX;
173    strncpy(addr.sun_path, sname, sizeof(addr.sun_path)-1);
174    if (connect(fd, (struct sockaddr*)&addr, sizeof(addr)) == -1) {
175      perror("connect error");
176      setMapInMaps(conf,"lenv","message",_("Unable to connect"));
177      return SERVICE_FAILED;
178    }
179    if (write(fd, "3", 1) != rc) {
180      if (rc < 0) {
181        perror("write error");
182        setMapInMaps(conf,"lenv","message",_("Unable to announce the successful execution of the HPC service"));
183        close(fd);
184        return SERVICE_FAILED;
185      }
186    }
187    close(fd);
188    setOutputValue(outputs,"Result",(char*)"\"FinalizeHPC run successfully\"",32);
189
190    return SERVICE_SUCCEEDED;
191  }
192
193}
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